Variant report

Variant	rs16962733
Chromosome Location	chr15:49962990-49962991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49958418..49961661-chr15:49962347..49965829,3	K562	blood:
2	chr15:49962247..49964290-chr15:49965595..49967468,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10519237	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11070712	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12901023	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12901631	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12902098	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12904876	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12906970	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12907986	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12910139	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12913643	0.81[EUR][1000 genomes]
rs12913706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1507617	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588129	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs16962583	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes]
rs16962673	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16962755	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1843147	0.88[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1911617	0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2202711	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2202712	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2202713	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34134305	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34200965	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34377746	0.81[EUR][1000 genomes]
rs34443321	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34531968	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34764936	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34779255	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34798694	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34951376	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34980263	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34982209	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35112372	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35224895	0.81[EUR][1000 genomes]
rs35451130	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35563735	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35699093	0.81[EUR][1000 genomes]
rs36114417	0.81[EUR][1000 genomes]
rs4304966	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56248339	0.81[EUR][1000 genomes]
rs66535408	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67196042	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71467692	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72729172	0.81[EUR][1000 genomes]
rs72731149	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72731157	0.86[EUR][1000 genomes]
rs731052	0.94[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs906420	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49957200-49965600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:49960400-49965400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:49961400-49963200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:49961800-49966800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49962000-49966600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:49962200-49965800	Weak transcription	Osteobl	bone
7	chr15:49962400-49966600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:49962400-49966800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:49962800-49963000	Enhancers	Ovary	ovary
10	chr15:49962800-49966800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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