Variant report

Variant	rs34764936
Chromosome Location	chr15:49988778-49988779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49911241..49913441-chr15:49987137..49988926,2	MCF-7	breast:
2	chr15:49983107..49986067-chr15:49987046..49989205,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166262	Chromatin interaction
ENSG00000104047	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10519237	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11070712	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901023	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12901631	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12902098	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12904876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12906970	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12907986	0.91[EUR][1000 genomes]
rs12910139	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12913643	0.83[EUR][1000 genomes]
rs12913706	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1507617	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16962583	0.83[EUR][1000 genomes]
rs16962673	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16962733	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16962755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1843147	0.88[EUR][1000 genomes]
rs1911617	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2202711	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2202712	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2202713	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34134305	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34200965	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34443321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34531968	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34779255	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34798694	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34951376	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34980263	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34982209	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35112372	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35224895	0.83[EUR][1000 genomes]
rs35451130	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35563735	0.87[EUR][1000 genomes]
rs35699093	0.83[EUR][1000 genomes]
rs36114417	0.83[EUR][1000 genomes]
rs4304966	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56248339	0.83[EUR][1000 genomes]
rs66535408	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67196042	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67487456	0.82[EUR][1000 genomes]
rs71467692	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72729172	0.83[EUR][1000 genomes]
rs72731149	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72731157	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs731052	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs906420	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49984200-49990200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:49984400-49989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:49986400-49990200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:49986800-49990200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:49988000-49989000	Weak transcription	NHLF	lung
6	chr15:49988200-49989800	Enhancers	Osteobl	bone
7	chr15:49988400-49990000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links