Variant report

Variant	rs4407014
Chromosome Location	chr15:49758171-49758172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11070712	1.00[AFR][1000 genomes]
rs12324090	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592126	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12592839	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12594926	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12900911	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12901023	1.00[AFR][1000 genomes]
rs12901631	1.00[AFR][1000 genomes]
rs12906292	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12907986	1.00[AFR][1000 genomes]
rs12908295	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12909835	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12913210	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12913379	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12913571	0.88[ASN][1000 genomes]
rs12913643	1.00[AFR][1000 genomes]
rs12913706	1.00[AFR][1000 genomes]
rs16962583	1.00[AFR][1000 genomes]
rs16962673	1.00[AFR][1000 genomes]
rs2007443	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34134305	1.00[AFR][1000 genomes]
rs34212162	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34291739	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34377746	1.00[AFR][1000 genomes]
rs34461215	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34492504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34531968	1.00[AFR][1000 genomes]
rs34605270	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34737835	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34918968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34951376	1.00[AFR][1000 genomes]
rs34982209	1.00[AFR][1000 genomes]
rs35091054	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35112372	1.00[AFR][1000 genomes]
rs35145376	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35224895	1.00[AFR][1000 genomes]
rs35240887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35543719	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35563735	1.00[AFR][1000 genomes]
rs35683135	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35686890	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35699093	1.00[AFR][1000 genomes]
rs35799750	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36048625	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36106985	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36114417	1.00[AFR][1000 genomes]
rs4304966	1.00[AFR][1000 genomes]
rs55662230	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55691379	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56053668	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56248339	1.00[AFR][1000 genomes]
rs66535408	1.00[AFR][1000 genomes]
rs67031905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71467682	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71467683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71467692	1.00[AFR][1000 genomes]
rs7175275	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72729117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729172	1.00[AFR][1000 genomes]
rs8025420	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8029303	0.89[ASN][1000 genomes]
rs8030269	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9972602	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv974574	chr15:49752716-49764974	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49752400-49764000	Weak transcription	HSMM	muscle
2	chr15:49752600-49758200	Enhancers	NHDF-Ad	bronchial
3	chr15:49753200-49758800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:49753800-49758400	Weak transcription	Hela-S3	cervix
5	chr15:49754200-49758600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:49754200-49759200	Weak transcription	Adipose Nuclei	Adipose
7	chr15:49754400-49759400	Weak transcription	HSMMtube	muscle
8	chr15:49754600-49759800	Genic enhancers	Osteobl	bone
9	chr15:49755000-49758400	Weak transcription	NHLF	lung
10	chr15:49755000-49764000	Weak transcription	Fetal Lung	lung
11	chr15:49755400-49758800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:49755400-49758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:49755400-49764200	Weak transcription	Fetal Heart	heart
14	chr15:49755600-49758800	Weak transcription	Ovary	ovary
15	chr15:49755800-49758800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr15:49756000-49758400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:49756000-49758400	Weak transcription	Liver	Liver
18	chr15:49756200-49758200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:49756400-49758200	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:49756400-49758400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:49757800-49758200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:49757800-49760200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:49757800-49760800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:49758000-49758200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:49758000-49759800	Active TSS	Stomach Smooth Muscle	stomach
26	chr15:49758000-49761000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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