Variant report

Variant	rs34918968
Chromosome Location	chr15:49785791-49785792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49784674..49786999-chr15:49912738..49914665,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166262	Chromatin interaction
ENSG00000104047	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11070712	1.00[AFR][1000 genomes]
rs12324090	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592126	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592839	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594926	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900911	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901023	1.00[AFR][1000 genomes]
rs12901631	1.00[AFR][1000 genomes]
rs12906292	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12907986	1.00[AFR][1000 genomes]
rs12908295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12909835	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12913210	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12913379	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12913571	0.91[ASN][1000 genomes]
rs12913643	1.00[AFR][1000 genomes]
rs12913706	1.00[AFR][1000 genomes]
rs16962583	1.00[AFR][1000 genomes]
rs16962673	1.00[AFR][1000 genomes]
rs2007443	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34134305	1.00[AFR][1000 genomes]
rs34212162	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34291739	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34377746	1.00[AFR][1000 genomes]
rs34461215	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34492504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34531968	1.00[AFR][1000 genomes]
rs34605270	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34737835	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34951376	1.00[AFR][1000 genomes]
rs34982209	1.00[AFR][1000 genomes]
rs35091054	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35112372	1.00[AFR][1000 genomes]
rs35145376	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35224895	1.00[AFR][1000 genomes]
rs35240887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35543719	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35563735	1.00[AFR][1000 genomes]
rs35683135	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35686890	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35699093	1.00[AFR][1000 genomes]
rs35799750	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36048625	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36106985	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36114417	1.00[AFR][1000 genomes]
rs4304966	1.00[AFR][1000 genomes]
rs4407014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55662230	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55691379	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56053668	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56248339	1.00[AFR][1000 genomes]
rs66535408	1.00[AFR][1000 genomes]
rs67031905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71467682	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71467683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71467692	1.00[AFR][1000 genomes]
rs7175275	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72729117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72729172	1.00[AFR][1000 genomes]
rs8025420	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8029303	0.90[ASN][1000 genomes]
rs8030269	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9972602	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043119	chr15:49760222-49844366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49764600-49788400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49777200-49788800	Weak transcription	Fetal Lung	lung
3	chr15:49778400-49787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:49781800-49789800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:49782200-49788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49783600-49789800	Enhancers	Hela-S3	cervix
7	chr15:49784400-49789200	Enhancers	NHDF-Ad	bronchial
8	chr15:49784600-49785800	Enhancers	HMEC	breast
9	chr15:49784600-49787200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:49784800-49785800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:49785400-49786000	Enhancers	NHLF	lung
12	chr15:49785400-49786200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:49785600-49786600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:49785600-49787000	Weak transcription	Osteobl	bone

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