Variant report

Variant	rs35111270
Chromosome Location	chr4:125808200-125808201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125806088..125809015-chr4:125822425..125824576,2	MCF-7	breast:
2	chr4:125782896..125785311-chr4:125806709..125809197,2	MCF-7	breast:
3	chr4:125632895..125634759-chr4:125807417..125811100,3	MCF-7	breast:
4	chr4:125633614..125636587-chr4:125806033..125809617,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10033902	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734680	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735485	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115210	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130715	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138940	1.00[ASN][1000 genomes]
rs1483594	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1483596	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1506555	1.00[ASN][1000 genomes]
rs1848057	1.00[ASN][1000 genomes]
rs1995627	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35080385	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36026769	1.00[ASN][1000 genomes]
rs4834005	1.00[ASN][1000 genomes]
rs5005646	1.00[ASN][1000 genomes]
rs62322130	1.00[ASN][1000 genomes]
rs62322133	1.00[ASN][1000 genomes]
rs62322135	1.00[ASN][1000 genomes]
rs62323260	1.00[ASN][1000 genomes]
rs62323300	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323306	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6814312	1.00[ASN][1000 genomes]
rs6820187	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820944	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821373	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832445	1.00[ASN][1000 genomes]
rs6838658	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6838702	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6857612	1.00[ASN][1000 genomes]
rs72685827	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7687072	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3377839	chr4:125806152-125809897	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv470069	chr4:125807868-125850998	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35111270	ANKRD50	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125798200-125820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125807800-125814000	Weak transcription	Gastric	stomach
3	chr4:125808200-125808600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:125808200-125809400	Enhancers	Hela-S3	cervix

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