Variant report
| Variant | rs62322135 |
|---|---|
| Chromosome Location | chr4:125754279-125754280 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10033902 | 1.00[ASN][1000 genomes] |
| rs11734680 | 1.00[ASN][1000 genomes] |
| rs11735485 | 1.00[ASN][1000 genomes] |
| rs13115210 | 1.00[ASN][1000 genomes] |
| rs13130715 | 1.00[ASN][1000 genomes] |
| rs13138940 | 1.00[ASN][1000 genomes] |
| rs1506555 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1848057 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1995627 | 1.00[ASN][1000 genomes] |
| rs35080385 | 1.00[ASN][1000 genomes] |
| rs35111270 | 1.00[ASN][1000 genomes] |
| rs36026769 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4834005 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5005646 | 1.00[ASN][1000 genomes] |
| rs62322130 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62322131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62322133 | 1.00[ASN][1000 genomes] |
| rs62323260 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62323300 | 1.00[ASN][1000 genomes] |
| rs6814312 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6820187 | 1.00[ASN][1000 genomes] |
| rs6820944 | 1.00[ASN][1000 genomes] |
| rs6821373 | 1.00[ASN][1000 genomes] |
| rs6832445 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6838658 | 1.00[ASN][1000 genomes] |
| rs6857612 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7687072 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879883 | chr4:125732734-125767985 | Enhancers ZNF genes & repeats Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125724600-125759600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
