Variant report
| Variant | rs7687072 |
|---|---|
| Chromosome Location | chr4:125706911-125706912 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125632846..125636211-chr4:125706157..125708453,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10033902 | 1.00[ASN][1000 genomes] |
| rs11734680 | 1.00[ASN][1000 genomes] |
| rs11735485 | 1.00[ASN][1000 genomes] |
| rs13115210 | 1.00[ASN][1000 genomes] |
| rs13130715 | 1.00[ASN][1000 genomes] |
| rs13138940 | 1.00[ASN][1000 genomes] |
| rs1506555 | 1.00[ASN][1000 genomes] |
| rs1848057 | 1.00[ASN][1000 genomes] |
| rs1995627 | 1.00[ASN][1000 genomes] |
| rs35080385 | 1.00[ASN][1000 genomes] |
| rs35111270 | 1.00[ASN][1000 genomes] |
| rs36026769 | 1.00[ASN][1000 genomes] |
| rs4834005 | 1.00[ASN][1000 genomes] |
| rs5005646 | 1.00[ASN][1000 genomes] |
| rs62322130 | 1.00[ASN][1000 genomes] |
| rs62322133 | 1.00[ASN][1000 genomes] |
| rs62322135 | 1.00[ASN][1000 genomes] |
| rs62323260 | 1.00[ASN][1000 genomes] |
| rs62323300 | 1.00[ASN][1000 genomes] |
| rs6814312 | 1.00[ASN][1000 genomes] |
| rs6820187 | 1.00[ASN][1000 genomes] |
| rs6820944 | 1.00[ASN][1000 genomes] |
| rs6821373 | 1.00[ASN][1000 genomes] |
| rs6832445 | 1.00[ASN][1000 genomes] |
| rs6838658 | 1.00[ASN][1000 genomes] |
| rs6857612 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv437423 | chr4:125705944-125707773 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125706400-125707800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
