Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10033902	1.00[ASN][1000 genomes]
rs11734680	1.00[ASN][1000 genomes]
rs11735485	1.00[ASN][1000 genomes]
rs13115210	1.00[ASN][1000 genomes]
rs13130715	1.00[ASN][1000 genomes]
rs13138940	1.00[ASN][1000 genomes]
rs1506555	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848057	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995627	1.00[ASN][1000 genomes]
rs35080385	1.00[ASN][1000 genomes]
rs35111270	1.00[ASN][1000 genomes]
rs36026769	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834005	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5005646	1.00[ASN][1000 genomes]
rs62322130	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62322131	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62322133	1.00[ASN][1000 genomes]
rs62322135	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323260	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62323300	1.00[ASN][1000 genomes]
rs6820187	1.00[ASN][1000 genomes]
rs6820944	1.00[ASN][1000 genomes]
rs6821373	1.00[ASN][1000 genomes]
rs6832445	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838658	1.00[ASN][1000 genomes]
rs6857612	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687072	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv15885	chr4:125727333-125730018	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125726600-125731400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:125726800-125731200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:125727200-125727800	Enhancers	Brain Germinal Matrix	brain
5	chr4:125727600-125727800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:125727600-125727800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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