Variant report

Variant	rs35215648
Chromosome Location	chr19:56983716-56983717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12709959	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12979827	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17207432	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17207481	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28815239	0.89[AMR][1000 genomes]
rs34403290	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35520457	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36147582	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62121592	0.91[AMR][1000 genomes]
rs62121594	0.91[AMR][1000 genomes]
rs62121597	0.93[AMR][1000 genomes]
rs8113270	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9646635	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9749084	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9749115	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv580385	chr19:56918598-57072433	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1057240	chr19:56919831-57153659	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv544097	chr19:56919831-57153659	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv580386	chr19:56924761-57072433	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv1055357	chr19:56933632-57190007	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56957200-56987400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:56957400-56985000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:56957400-56987400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr19:56957400-56987400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:56967200-56987600	Weak transcription	Fetal Heart	heart
6	chr19:56969400-56987600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:56972800-56987600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:56975600-56985200	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr19:56975600-56987200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr19:56976800-56987200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:56978000-56984400	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr19:56979800-56985000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
13	chr19:56980000-56986000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
14	chr19:56980200-56984000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr19:56980200-56984000	ZNF genes & repeats	Fetal Stomach	stomach
16	chr19:56980200-56985000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
17	chr19:56980400-56983800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr19:56980400-56984000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr19:56980400-56985800	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr19:56980400-56987200	ZNF genes & repeats	Fetal Brain Female	brain
21	chr19:56981000-56984000	Strong transcription	Brain Anterior Caudate	brain
22	chr19:56981000-56984200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr19:56981000-56984800	ZNF genes & repeats	Fetal Intestine Large	intestine
24	chr19:56981000-56987600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr19:56981000-56988000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr19:56981200-56983800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
27	chr19:56981200-56985200	ZNF genes & repeats	Aorta	Aorta
28	chr19:56981200-56985600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:56981400-56983800	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr19:56981400-56983800	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr19:56981400-56984000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:56981400-56984200	Strong transcription	HSMMtube	muscle
33	chr19:56981400-56985400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr19:56981400-56986000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
35	chr19:56981400-56987600	ZNF genes & repeats	Ovary	ovary
36	chr19:56981600-56983800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
37	chr19:56981600-56984000	Strong transcription	Right Ventricle	heart
38	chr19:56981600-56984400	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr19:56981600-56984400	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr19:56981600-56984600	Strong transcription	Psoas Muscle	Psoas
41	chr19:56981600-56985200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
42	chr19:56982000-56984800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr19:56982000-56987600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:56982200-56983800	Strong transcription	Brain Hippocampus Middle	brain
45	chr19:56982200-56984200	Strong transcription	Fetal Muscle Leg	muscle
46	chr19:56982200-56984200	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr19:56982400-56984200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr19:56982400-56984800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr19:56982600-56984000	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr19:56982600-56984000	Strong transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links