Variant report

Variant	rs35353908
Chromosome Location	chr10:22002783-22002784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22001640..22004162-chr10:22017196..22019106,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56831233	0.92[AFR][1000 genomes]
rs58314916	0.85[AFR][1000 genomes]
rs58742044	1.00[AMR][1000 genomes]
rs59806848	0.85[AFR][1000 genomes]
rs60142116	0.83[AFR][1000 genomes]
rs60215493	0.85[AFR][1000 genomes]
rs61322581	1.00[AMR][1000 genomes]
rs61340637	0.85[AFR][1000 genomes]
rs7067619	0.92[AFR][1000 genomes]
rs7097783	0.92[AFR][1000 genomes]
rs7924290	0.83[AFR][1000 genomes]
rs9663593	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21942600-22004000	Weak transcription	NH-A	brain
2	chr10:21976800-22013000	Weak transcription	HSMMtube	muscle
3	chr10:21984000-22012400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:21984400-22002800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:21984800-22022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:21987400-22004000	Weak transcription	Fetal Kidney	kidney
7	chr10:21989400-22013000	Weak transcription	Fetal Brain Male	brain
8	chr10:21990200-22004800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:21990200-22012800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:21991000-22003400	Weak transcription	Fetal Brain Female	brain
11	chr10:21992000-22002800	Weak transcription	Brain Anterior Caudate	brain
12	chr10:21992200-22004400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:21992200-22005000	Strong transcription	HepG2	liver
14	chr10:21992600-22002800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:21992600-22013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr10:21992800-22003400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:21993600-22002800	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:21993800-22002800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:21994000-22002800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:21994200-22004200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:21994600-22009000	Weak transcription	NHLF	lung
22	chr10:21994600-22013200	Weak transcription	Thymus	Thymus
23	chr10:21994800-22002800	Weak transcription	Esophagus	oesophagus
24	chr10:21994800-22003400	Weak transcription	Ovary	ovary
25	chr10:21994800-22004000	Weak transcription	Right Atrium	heart
26	chr10:21994800-22004200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:21994800-22013400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:21994800-22015800	Weak transcription	Gastric	stomach
29	chr10:21994800-22016200	Weak transcription	Pancreas	Pancrea
30	chr10:21995000-22003600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:21995000-22003800	Weak transcription	NHEK	skin
32	chr10:21995000-22004000	Weak transcription	Right Ventricle	heart
33	chr10:21995000-22009000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:21995000-22012400	Weak transcription	Brain Germinal Matrix	brain
35	chr10:21995000-22013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:21995000-22022600	Weak transcription	Spleen	Spleen
37	chr10:21995400-22004000	Weak transcription	Fetal Heart	heart
38	chr10:21995800-22004600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:21996000-22004600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:21996000-22013200	Weak transcription	Small Intestine	intestine
41	chr10:21996800-22004000	Weak transcription	A549	lung
42	chr10:21997200-22003400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:21997200-22004000	Weak transcription	Brain Angular Gyrus	brain
44	chr10:21997200-22008800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr10:21997200-22009000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:21997400-22002800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:21997400-22002800	Weak transcription	HSMM	muscle
48	chr10:21997600-22004000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr10:21997800-22004200	Weak transcription	Brain Substantia Nigra	brain
50	chr10:21997800-22005800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links