Variant report

Variant	rs59806848
Chromosome Location	chr10:21882201-21882202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21812700..21815423-chr10:21879922..21882921,2	K562	blood:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs35138225	1.00[AMR][1000 genomes]
rs35353908	0.85[AFR][1000 genomes]
rs56831233	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58314916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60215493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61340637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069907	1.00[AMR][1000 genomes]
rs7077377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101126	1.00[AMR][1000 genomes]
rs9663593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21930400	Weak transcription	Gastric	stomach
2	chr10:21841200-21897200	Weak transcription	Fetal Kidney	kidney
3	chr10:21842200-21897200	Weak transcription	Fetal Brain Male	brain
4	chr10:21844600-21896600	Weak transcription	Hela-S3	cervix
5	chr10:21846800-21889600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:21846800-21892800	Weak transcription	HSMMtube	muscle
7	chr10:21846800-21913600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:21847000-21901200	Weak transcription	HUVEC	blood vessel
9	chr10:21848800-21914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:21849400-21889600	Weak transcription	NHEK	skin
11	chr10:21849400-21913600	Weak transcription	Esophagus	oesophagus
12	chr10:21849800-21889400	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:21849800-21894600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:21849800-21897000	Weak transcription	Fetal Brain Female	brain
15	chr10:21850800-21889600	Weak transcription	HMEC	breast
16	chr10:21856800-21913400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:21859400-21889800	Weak transcription	Pancreas	Pancrea
18	chr10:21860400-21886600	Weak transcription	Small Intestine	intestine
19	chr10:21860600-21895400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:21861200-21883000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:21861200-21890000	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:21861400-21898400	Weak transcription	Brain Angular Gyrus	brain
23	chr10:21861400-21902800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:21861800-21889600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:21861800-21895400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:21861800-21898400	Weak transcription	Brain Anterior Caudate	brain
27	chr10:21861800-21913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:21862200-21894200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:21862400-21913600	Weak transcription	Adipose Nuclei	Adipose
30	chr10:21862400-21916400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:21863800-21889000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:21866000-21913600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:21870200-21882600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:21870600-21889800	Weak transcription	NHLF	lung
35	chr10:21870600-21900600	Weak transcription	Right Ventricle	heart
36	chr10:21870800-21895000	Weak transcription	Osteobl	bone
37	chr10:21871000-21895000	Weak transcription	NH-A	brain
38	chr10:21872200-21897800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:21872800-21886400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:21872800-21895400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:21873400-21883200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:21873800-21883000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:21874000-21882800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr10:21874000-21938400	Weak transcription	Spleen	Spleen
45	chr10:21874200-21883200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:21874600-21889600	Weak transcription	K562	blood
47	chr10:21874600-21923400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:21875400-21888400	Weak transcription	A549	lung
49	chr10:21875600-21907600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:21875800-21894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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