Variant report

Variant	rs9663593
Chromosome Location	chr10:21917913-21917914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21822403..21823988-chr10:21916839..21919635,2	MCF-7	breast:
2	chr10:21912943..21915292-chr10:21917187..21920065,2	K562	blood:
3	chr10:21909487..21912918-chr10:21916062..21919904,3	K562	blood:

Variant related genes	Relation type
ENSG00000078403	Chromatin interaction
ENSG00000223984	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs35138225	1.00[AMR][1000 genomes]
rs35353908	0.85[AFR][1000 genomes]
rs56831233	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58314916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59806848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60215493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61340637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069907	1.00[AMR][1000 genomes]
rs7077377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101126	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21930400	Weak transcription	Gastric	stomach
2	chr10:21874000-21938400	Weak transcription	Spleen	Spleen
3	chr10:21874600-21923400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:21877400-21926600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:21892400-21926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:21893600-21926000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:21896600-21926000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:21896800-21973200	Weak transcription	Hela-S3	cervix
9	chr10:21897200-21928000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:21897400-21925000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:21897400-21925200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:21897400-21960200	Weak transcription	Fetal Brain Male	brain
13	chr10:21898200-21941200	Weak transcription	Fetal Kidney	kidney
14	chr10:21898600-21943800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:21899000-21923800	Weak transcription	Small Intestine	intestine
16	chr10:21899400-21938000	Weak transcription	Aorta	Aorta
17	chr10:21901000-21923200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:21901000-21933600	Weak transcription	Right Ventricle	heart
19	chr10:21903000-21919200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:21903600-21924800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:21903800-21925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:21904600-21928400	Weak transcription	Brain Germinal Matrix	brain
23	chr10:21904600-21929200	Weak transcription	Fetal Brain Female	brain
24	chr10:21905400-21932200	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:21906600-21940600	Weak transcription	NH-A	brain
26	chr10:21908400-21964000	Weak transcription	Colonic Mucosa	Colon
27	chr10:21909400-21938200	Weak transcription	NHDF-Ad	bronchial
28	chr10:21909800-21924000	Weak transcription	GM12878-XiMat	blood
29	chr10:21910600-21927800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:21911000-21920600	Strong transcription	Primary B cells from cord blood	blood
31	chr10:21911000-21921000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:21911200-21921000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:21911200-21921800	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr10:21911600-21921800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:21911800-21921000	Strong transcription	A549	lung
36	chr10:21912200-21923600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:21913200-21947000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:21913600-21925000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:21914000-21927800	Weak transcription	Lung	lung
40	chr10:21914000-21937600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:21914200-21924200	Weak transcription	Fetal Intestine Small	intestine
42	chr10:21914400-21918400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:21914800-21919000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:21914800-21919200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:21914800-21920000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:21914800-21924000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:21914800-21925400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:21914800-21925600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:21914800-21937600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr10:21914800-21941800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links