Variant report

Variant	rs60215493
Chromosome Location	chr10:21891473-21891474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs35138225	1.00[AMR][1000 genomes]
rs35353908	0.85[AFR][1000 genomes]
rs56831233	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58314916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59806848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61340637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069907	1.00[AMR][1000 genomes]
rs7077377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101126	1.00[AMR][1000 genomes]
rs9663593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21930400	Weak transcription	Gastric	stomach
2	chr10:21841200-21897200	Weak transcription	Fetal Kidney	kidney
3	chr10:21842200-21897200	Weak transcription	Fetal Brain Male	brain
4	chr10:21844600-21896600	Weak transcription	Hela-S3	cervix
5	chr10:21846800-21892800	Weak transcription	HSMMtube	muscle
6	chr10:21846800-21913600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:21847000-21901200	Weak transcription	HUVEC	blood vessel
8	chr10:21848800-21914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:21849400-21913600	Weak transcription	Esophagus	oesophagus
10	chr10:21849800-21894600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:21849800-21897000	Weak transcription	Fetal Brain Female	brain
12	chr10:21856800-21913400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:21860600-21895400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:21861400-21898400	Weak transcription	Brain Angular Gyrus	brain
15	chr10:21861400-21902800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:21861800-21895400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:21861800-21898400	Weak transcription	Brain Anterior Caudate	brain
18	chr10:21861800-21913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:21862200-21894200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:21862400-21913600	Weak transcription	Adipose Nuclei	Adipose
21	chr10:21862400-21916400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:21866000-21913600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:21870600-21900600	Weak transcription	Right Ventricle	heart
24	chr10:21870800-21895000	Weak transcription	Osteobl	bone
25	chr10:21871000-21895000	Weak transcription	NH-A	brain
26	chr10:21872200-21897800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:21872800-21895400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:21874000-21938400	Weak transcription	Spleen	Spleen
29	chr10:21874600-21923400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:21875600-21907600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:21875800-21894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:21875800-21896200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:21876200-21897000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:21876400-21895000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:21876400-21896400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:21876400-21913600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:21876800-21895000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:21877000-21895200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:21877400-21906200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:21877400-21926600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:21877600-21895000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:21877800-21895200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:21878000-21895000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:21878000-21895200	Weak transcription	Placenta	Placenta
45	chr10:21878000-21902400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:21878000-21902400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:21878400-21895000	Weak transcription	Fetal Lung	lung
48	chr10:21878600-21902400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:21879000-21900600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:21879200-21895000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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