Variant report

Variant	rs61340637
Chromosome Location	chr10:21885670-21885671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21813084..21814597-chr10:21884150..21887122,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs35138225	1.00[AMR][1000 genomes]
rs35353908	0.85[AFR][1000 genomes]
rs56831233	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58314916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59806848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60215493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069907	1.00[AMR][1000 genomes]
rs7077377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101126	1.00[AMR][1000 genomes]
rs9663593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21930400	Weak transcription	Gastric	stomach
2	chr10:21841200-21897200	Weak transcription	Fetal Kidney	kidney
3	chr10:21842200-21897200	Weak transcription	Fetal Brain Male	brain
4	chr10:21844600-21896600	Weak transcription	Hela-S3	cervix
5	chr10:21846800-21889600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:21846800-21892800	Weak transcription	HSMMtube	muscle
7	chr10:21846800-21913600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:21847000-21901200	Weak transcription	HUVEC	blood vessel
9	chr10:21848800-21914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:21849400-21889600	Weak transcription	NHEK	skin
11	chr10:21849400-21913600	Weak transcription	Esophagus	oesophagus
12	chr10:21849800-21889400	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:21849800-21894600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:21849800-21897000	Weak transcription	Fetal Brain Female	brain
15	chr10:21850800-21889600	Weak transcription	HMEC	breast
16	chr10:21856800-21913400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:21859400-21889800	Weak transcription	Pancreas	Pancrea
18	chr10:21860400-21886600	Weak transcription	Small Intestine	intestine
19	chr10:21860600-21895400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:21861200-21890000	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:21861400-21898400	Weak transcription	Brain Angular Gyrus	brain
22	chr10:21861400-21902800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:21861800-21889600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:21861800-21895400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:21861800-21898400	Weak transcription	Brain Anterior Caudate	brain
26	chr10:21861800-21913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:21862200-21894200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:21862400-21913600	Weak transcription	Adipose Nuclei	Adipose
29	chr10:21862400-21916400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:21863800-21889000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:21866000-21913600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:21870600-21889800	Weak transcription	NHLF	lung
33	chr10:21870600-21900600	Weak transcription	Right Ventricle	heart
34	chr10:21870800-21895000	Weak transcription	Osteobl	bone
35	chr10:21871000-21895000	Weak transcription	NH-A	brain
36	chr10:21872200-21897800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:21872800-21886400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:21872800-21895400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:21874000-21938400	Weak transcription	Spleen	Spleen
40	chr10:21874600-21889600	Weak transcription	K562	blood
41	chr10:21874600-21923400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:21875400-21888400	Weak transcription	A549	lung
43	chr10:21875600-21907600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:21875800-21894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:21875800-21896200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:21876200-21897000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:21876400-21895000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:21876400-21896400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:21876400-21913600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:21876800-21895000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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