Variant report

Variant	rs35400893
Chromosome Location	chr10:6056749-6056750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6055685..6057860-chr10:6061812..6063688,2	MCF-7	breast:
2	chr10:6056251..6056808-chr10:6092449..6093422,2	K562	blood:
3	chr10:6055157..6057962-chr10:6121223..6124023,2	K562	blood:
4	chr10:6018870..6020448-chr10:6054615..6057023,2	MCF-7	breast:
5	chr10:6055607..6056787-chr10:6130415..6131358,10	MCF-7	breast:
6	chr10:6056205..6056760-chr10:6443486..6444349,2	K562	blood:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12415242	0.93[EUR][1000 genomes]
rs12569923	0.93[EUR][1000 genomes]
rs12570168	0.93[EUR][1000 genomes]
rs12570860	0.93[EUR][1000 genomes]
rs12572257	0.86[EUR][1000 genomes]
rs12572859	0.93[EUR][1000 genomes]
rs17149458	0.93[EUR][1000 genomes]
rs2274036	0.93[EUR][1000 genomes]
rs34384151	0.93[EUR][1000 genomes]
rs41294701	0.93[EUR][1000 genomes]
rs59454145	0.86[EUR][1000 genomes]
rs60027621	0.86[EUR][1000 genomes]
rs60515796	0.86[EUR][1000 genomes]
rs61014376	0.93[EUR][1000 genomes]
rs61248143	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6055800-6057200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr10:6055800-6057400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:6055800-6057600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr10:6055800-6057600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:6055800-6057800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:6055800-6057800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:6055800-6058000	Weak transcription	Lung	lung
8	chr10:6056000-6056800	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:6056000-6056800	Enhancers	Fetal Thymus	thymus
10	chr10:6056000-6056800	Enhancers	Thymus	Thymus
11	chr10:6056000-6056800	Enhancers	GM12878-XiMat	blood
12	chr10:6056000-6057000	Enhancers	Primary T cells from cord blood	blood
13	chr10:6056000-6057000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:6056000-6057000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:6056000-6057000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr10:6056000-6057200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:6056000-6058000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:6056200-6061000	Weak transcription	K562	blood
19	chr10:6056400-6056800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:6056400-6056800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr10:6056400-6056800	Enhancers	HMEC	breast
22	chr10:6056400-6056800	Enhancers	NHEK	skin
23	chr10:6056400-6057200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
24	chr10:6056400-6058000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:6056400-6059200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:6056600-6058000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:6056600-6059800	Weak transcription	Stomach Mucosa	stomach

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