Variant report

Variant	rs60027621
Chromosome Location	chr10:6043968-6043969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12415242	0.93[EUR][1000 genomes]
rs12569923	0.93[EUR][1000 genomes]
rs12570168	0.93[EUR][1000 genomes]
rs12570860	0.93[EUR][1000 genomes]
rs12572257	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12572859	0.93[EUR][1000 genomes]
rs17149458	0.93[EUR][1000 genomes]
rs2274036	0.93[EUR][1000 genomes]
rs34384151	0.93[EUR][1000 genomes]
rs35400893	0.86[EUR][1000 genomes]
rs41294701	0.93[EUR][1000 genomes]
rs59454145	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60515796	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61014376	0.93[EUR][1000 genomes]
rs61248143	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6041600-6047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:6042400-6047000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:6042600-6044200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:6043200-6044000	Enhancers	Primary T cells from cord blood	blood
5	chr10:6043200-6044000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr10:6043200-6044000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:6043400-6044000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:6043400-6044000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:6043400-6044000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:6043400-6044000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:6043400-6044200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:6043600-6044000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:6043600-6044000	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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