Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr10:6114430-6115217	GM12878	blood:	n/a	n/a
2	CREB1	chr10:6114249-6115185	GM12878	blood:	n/a	n/a
3	NFIC	chr10:6114188-6115153	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6114985..6117778-chr10:6128679..6130430,2	MCF-7	breast:
2	chr10:6114486..6117388-chr10:6118975..6120679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214015	TF binding region

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11256611	0.90[ASN][1000 genomes]
rs12251307	0.90[ASN][1000 genomes]
rs12415242	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12415924	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12569923	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570168	1.00[EUR][1000 genomes]
rs12572197	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12572257	0.93[EUR][1000 genomes]
rs12572859	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17149458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17149718	0.85[ASN][1000 genomes]
rs2274036	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34225924	0.91[ASN][1000 genomes]
rs34384151	1.00[EUR][1000 genomes]
rs35400893	0.93[EUR][1000 genomes]
rs41294701	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41295067	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs41295083	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs41295107	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs41295111	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4749856	1.00[AFR][1000 genomes]
rs59454145	0.93[EUR][1000 genomes]
rs60027621	0.93[EUR][1000 genomes]
rs60515796	0.93[EUR][1000 genomes]
rs61014376	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61248143	0.93[EUR][1000 genomes]
rs61839680	0.90[ASN][1000 genomes]
rs62626322	0.96[ASN][1000 genomes]
rs8177656	1.00[AFR][1000 genomes]
rs8177688	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6108000-6115600	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:6109400-6115400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:6109400-6117400	Enhancers	Fetal Thymus	thymus
4	chr10:6111400-6115200	Enhancers	Primary B cells from cord blood	blood
5	chr10:6111600-6115200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:6111600-6115200	Enhancers	Dnd41	blood
7	chr10:6113000-6115200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:6113800-6115200	Flanking Active TSS	GM12878-XiMat	blood
9	chr10:6114000-6116600	Weak transcription	Right Atrium	heart
10	chr10:6114200-6117000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:6114400-6115400	Enhancers	Thymus	Thymus
12	chr10:6114400-6117000	Weak transcription	Lung	lung
13	chr10:6114400-6117200	Weak transcription	Left Ventricle	heart
14	chr10:6114600-6115200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr10:6114600-6116400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:6114800-6115400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:6115000-6115200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:6115000-6118000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr10:6115000-6124600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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