Variant report

Variant	rs8177688
Chromosome Location	chr10:6007549-6007550
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:6007484-6007561	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6005970..6007574-chr10:6034228..6036383,2	MCF-7	breast:
2	chr10:6003571..6011080-chr10:6014794..6021269,11	K562	blood:
3	chr10:5999303..6003344-chr10:6003662..6007961,5	MCF-7	breast:

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12415242	1.00[AFR][1000 genomes]
rs12415924	1.00[AFR][1000 genomes]
rs12569923	1.00[AFR][1000 genomes]
rs12570860	1.00[AFR][1000 genomes]
rs12572197	1.00[AFR][1000 genomes]
rs12572859	1.00[AFR][1000 genomes]
rs17149458	1.00[AFR][1000 genomes]
rs2274035	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2274036	1.00[AFR][1000 genomes]
rs41294701	1.00[AFR][1000 genomes]
rs41295067	1.00[AFR][1000 genomes]
rs41295083	1.00[AFR][1000 genomes]
rs41295107	1.00[AFR][1000 genomes]
rs41295111	1.00[AFR][1000 genomes]
rs4367845	0.80[CHB][hapmap]
rs4749856	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4749859	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61014376	1.00[AFR][1000 genomes]
rs8177656	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8177685	0.80[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8177692	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519436	chr10:5997820-6008613	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv975792	chr10:5998348-6008505	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
5	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
6	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
7	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
8	chr10:5988600-6011800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:5993600-6013200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:5994000-6011000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:5994000-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:5994200-6012200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:5994200-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:5995400-6012400	Weak transcription	Small Intestine	intestine
15	chr10:5997600-6007600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:5999400-6017600	Weak transcription	Primary B cells from cord blood	blood
17	chr10:5999800-6008400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:5999800-6011000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:6000000-6008600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:6000000-6008600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr10:6000200-6010800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:6001000-6017400	Weak transcription	NHLF	lung
23	chr10:6001200-6008200	Strong transcription	Fetal Intestine Small	intestine
24	chr10:6001200-6008600	Strong transcription	Fetal Stomach	stomach
25	chr10:6002400-6017800	Weak transcription	Placenta	Placenta
26	chr10:6002800-6010800	Weak transcription	Right Atrium	heart
27	chr10:6002800-6010800	Weak transcription	K562	blood
28	chr10:6002800-6012400	Weak transcription	Hela-S3	cervix
29	chr10:6002800-6013000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:6004000-6008000	Weak transcription	GM12878-XiMat	blood
31	chr10:6004000-6008200	Strong transcription	Lung	lung
32	chr10:6004000-6008200	Strong transcription	Spleen	Spleen
33	chr10:6004200-6013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:6004600-6007600	Strong transcription	Right Ventricle	heart
35	chr10:6004800-6008000	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:6005200-6008600	Genic enhancers	Pancreas	Pancrea
37	chr10:6005400-6012000	Weak transcription	Fetal Intestine Large	intestine
38	chr10:6005400-6013400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:6005400-6017400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:6005400-6017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:6005400-6018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:6005600-6013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:6005800-6012000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:6005800-6012800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:6005800-6013000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:6005800-6013400	Weak transcription	Esophagus	oesophagus
47	chr10:6005800-6018200	Weak transcription	Ovary	ovary
48	chr10:6006000-6010400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:6006400-6007600	Enhancers	Stomach Mucosa	stomach
50	chr10:6006600-6008400	Genic enhancers	Gastric	stomach

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