Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:6116790-6117311	MCF-7	breast:	n/a	n/a
2	GATA3	chr10:6116636-6117405	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr10:6116688-6117344	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr10:6116590-6117359	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6114985..6117778-chr10:6128679..6130430,2	MCF-7	breast:
2	chr10:6116771..6117539-chr10:6130301..6130858,2	MCF-7	breast:
3	chr10:6115957..6118076-chr10:6129404..6132278,2	K562	blood:
4	chr10:6114486..6117388-chr10:6118975..6120679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214015	TF binding region
ENSG00000134453	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11256611	0.93[ASN][1000 genomes]
rs12251307	0.93[ASN][1000 genomes]
rs12415242	1.00[AFR][1000 genomes]
rs12415924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12569923	1.00[AFR][1000 genomes]
rs12570860	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12572197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12572859	1.00[AFR][1000 genomes]
rs17149458	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17149718	0.80[ASN][1000 genomes]
rs17152229	1.00[AFR][1000 genomes]
rs2274036	1.00[AFR][1000 genomes]
rs34225924	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35929982	1.00[AFR][1000 genomes]
rs41294701	1.00[AFR][1000 genomes]
rs41295083	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41295107	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41295111	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749856	1.00[AFR][1000 genomes]
rs61014376	1.00[AFR][1000 genomes]
rs61839680	0.93[ASN][1000 genomes]
rs62626322	0.99[ASN][1000 genomes]
rs8177656	1.00[AFR][1000 genomes]
rs8177688	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6109400-6117400	Enhancers	Fetal Thymus	thymus
2	chr10:6115000-6118000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr10:6115000-6124600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:6115600-6124200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:6115600-6127800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:6116600-6117400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:6116600-6117400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:6116600-6117400	Bivalent Enhancer	Osteobl	bone
9	chr10:6116800-6117400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:6117000-6117400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:6117000-6117400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:6117000-6117400	Bivalent Enhancer	HSMMtube	muscle
13	chr10:6117000-6117400	Bivalent/Poised TSS	NHLF	lung
14	chr10:6117200-6117400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:6117200-6117400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:6117200-6117400	Enhancers	Left Ventricle	heart
17	chr10:6117200-6120200	Weak transcription	Thymus	Thymus

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