Variant report

Variant	rs12572859
Chromosome Location	chr10:6058040-6058041
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10905644	0.89[ASN][1000 genomes]
rs12415242	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12415924	1.00[AFR][1000 genomes]
rs12569923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570168	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12570860	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12572197	1.00[AFR][1000 genomes]
rs12572257	0.93[EUR][1000 genomes]
rs17149458	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274036	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34384151	1.00[EUR][1000 genomes]
rs35400893	0.93[EUR][1000 genomes]
rs41294701	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41295067	1.00[AFR][1000 genomes]
rs41295083	1.00[AFR][1000 genomes]
rs41295107	1.00[AFR][1000 genomes]
rs41295111	1.00[AFR][1000 genomes]
rs4749856	1.00[AFR][1000 genomes]
rs59454145	0.93[EUR][1000 genomes]
rs60027621	0.93[EUR][1000 genomes]
rs60515796	0.93[EUR][1000 genomes]
rs61014376	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61248143	0.93[EUR][1000 genomes]
rs8177656	1.00[AFR][1000 genomes]
rs8177688	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6056200-6061000	Weak transcription	K562	blood
2	chr10:6056400-6059200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:6056600-6059800	Weak transcription	Stomach Mucosa	stomach
4	chr10:6056800-6060400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:6057000-6066000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:6057200-6060600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:6057400-6059000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:6057400-6059800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:6057400-6068600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:6057600-6059000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:6057600-6059400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:6057600-6060400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr10:6057600-6062800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:6057800-6064400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:6057800-6069600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:6057800-6069800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:6058000-6058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:6058000-6058200	Enhancers	Lung	lung
19	chr10:6058000-6058400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:6058000-6058400	Enhancers	Fetal Thymus	thymus
21	chr10:6058000-6059400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:6058000-6068600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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