Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:6068386..6070210-chr10:6087289..6089702,2	K562	blood:
2	chr10:6068815..6071156-chr10:6071379..6075335,3	K562	blood:
3	chr10:6017486..6019803-chr10:6068609..6071051,2	MCF-7	breast:
4	chr10:6059382..6061395-chr10:6068804..6071571,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10905644	0.92[ASN][1000 genomes]
rs12415242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12415924	1.00[AFR][1000 genomes]
rs12569923	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12570168	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570860	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12572197	1.00[AFR][1000 genomes]
rs12572257	0.93[EUR][1000 genomes]
rs12572859	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17149458	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2274036	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34384151	1.00[EUR][1000 genomes]
rs35400893	0.93[EUR][1000 genomes]
rs41294701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41295067	1.00[AFR][1000 genomes]
rs41295083	1.00[AFR][1000 genomes]
rs41295107	1.00[AFR][1000 genomes]
rs41295111	1.00[AFR][1000 genomes]
rs4749856	1.00[AFR][1000 genomes]
rs59454145	0.93[EUR][1000 genomes]
rs60027621	0.93[EUR][1000 genomes]
rs60515796	0.93[EUR][1000 genomes]
rs61248143	0.93[EUR][1000 genomes]
rs8177656	1.00[AFR][1000 genomes]
rs8177688	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6057800-6069600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr10:6057800-6069800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:6060400-6070000	Weak transcription	Lung	lung
4	chr10:6060800-6075800	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:6061200-6070000	Weak transcription	Spleen	Spleen
6	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:6066800-6078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:6067000-6069600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:6067000-6070000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr10:6067800-6069800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:6068400-6070800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr10:6068600-6071000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:6069000-6069800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:6069200-6070400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:6069200-6070400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:6069400-6070400	Enhancers	Primary T helper cells fromperipheralblood	blood

Quick Search: