Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:6055157..6057962-chr10:6121223..6124023,2	K562	blood:
2	chr10:6110898..6113071-chr10:6121798..6124143,2	K562	blood:
3	chr10:6121462..6124119-chr10:6127226..6129947,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11256611	1.00[ASN][1000 genomes]
rs12251307	1.00[ASN][1000 genomes]
rs12415242	1.00[AFR][1000 genomes]
rs12415924	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12569923	1.00[AFR][1000 genomes]
rs12570860	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12572197	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572859	1.00[AFR][1000 genomes]
rs17149458	1.00[AFR][1000 genomes]
rs17152229	1.00[AFR][1000 genomes]
rs2274036	1.00[AFR][1000 genomes]
rs34225924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35929982	1.00[AFR][1000 genomes]
rs41294701	1.00[AFR][1000 genomes]
rs41295067	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41295083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41295107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749856	1.00[AFR][1000 genomes]
rs61014376	1.00[AFR][1000 genomes]
rs61839680	1.00[ASN][1000 genomes]
rs62626322	0.94[ASN][1000 genomes]
rs8177656	1.00[AFR][1000 genomes]
rs8177688	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6115000-6124600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:6115600-6124200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:6115600-6127800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:6117400-6123400	Weak transcription	Left Ventricle	heart
5	chr10:6121200-6123800	Weak transcription	Fetal Thymus	thymus
6	chr10:6121600-6125600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr10:6122600-6124600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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