Variant report

Variant	rs35531406
Chromosome Location	chr3:24431247-24431248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24339862..24342490-chr3:24429222..24432079,2	K562	blood:
2	chr3:24429881..24432866-chr3:24437467..24439284,2	MCF-7	breast:
3	chr3:24428751..24431920-chr3:24433157..24435631,4	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13070456	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086758	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34342126	1.00[ASN][1000 genomes]
rs34832185	0.82[AMR][1000 genomes]
rs34833017	0.81[AMR][1000 genomes]
rs35493522	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36186467	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3943744	0.81[AMR][1000 genomes]
rs71328478	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71328479	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626512	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24394000-24431400	Weak transcription	Gastric	stomach
2	chr3:24420200-24441600	Weak transcription	Liver	Liver
3	chr3:24427000-24432400	Weak transcription	Lung	lung
4	chr3:24427000-24433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:24427800-24432000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:24428000-24431600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:24428000-24432200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:24428000-24432200	Enhancers	HMEC	breast
9	chr3:24428200-24431800	Enhancers	NHEK	skin
10	chr3:24428600-24431600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:24428600-24431800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:24428600-24432000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:24428600-24432800	Enhancers	Colon Smooth Muscle	Colon
14	chr3:24428800-24432400	Weak transcription	Brain Angular Gyrus	brain
15	chr3:24428800-24432800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:24429000-24431800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:24429000-24432600	Enhancers	HSMMtube	muscle
18	chr3:24429000-24432800	Enhancers	Adipose Nuclei	Adipose
19	chr3:24429000-24432800	Enhancers	Pancreas	Pancrea
20	chr3:24429200-24432600	Enhancers	Stomach Smooth Muscle	stomach
21	chr3:24429200-24432800	Enhancers	Fetal Intestine Large	intestine
22	chr3:24429200-24432800	Enhancers	Left Ventricle	heart
23	chr3:24429600-24432600	Enhancers	Ovary	ovary
24	chr3:24429600-24433400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr3:24429800-24432200	Enhancers	HSMM	muscle
26	chr3:24429800-24432400	Enhancers	Fetal Intestine Small	intestine
27	chr3:24429800-24432800	Enhancers	Fetal Lung	lung
28	chr3:24429800-24432800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:24430000-24432800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr3:24430200-24431600	Enhancers	Esophagus	oesophagus
31	chr3:24430400-24431400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:24430400-24431400	Weak transcription	Right Atrium	heart
33	chr3:24430400-24431600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:24430400-24432000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:24430400-24437200	Weak transcription	K562	blood
36	chr3:24430600-24431400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr3:24430600-24431600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr3:24430600-24431600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr3:24430600-24431600	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr3:24430600-24431800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr3:24430600-24431800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr3:24430600-24431800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr3:24430600-24431800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:24430600-24432200	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr3:24430600-24432200	Enhancers	Stomach Mucosa	stomach
46	chr3:24430600-24432600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:24430600-24432600	Enhancers	Duodenum Mucosa	Duodenum
48	chr3:24430600-24432600	Enhancers	Fetal Stomach	stomach
49	chr3:24430600-24443600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:24430800-24431400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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