Variant report

Variant	rs7626512
Chromosome Location	chr3:24461325-24461326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24460201..24461830-chr3:24489473..24491006,2	MCF-7	breast:
2	chr3:24456522..24459959-chr3:24460140..24462139,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1010163	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070456	1.00[JPT][hapmap];0.97[TSI][hapmap]
rs13070554	1.00[JPT][hapmap]
rs13077437	1.00[JPT][hapmap]
rs13086758	1.00[JPT][hapmap]
rs13098564	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787379	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs2196432	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832185	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34833017	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493522	0.92[EUR][1000 genomes]
rs35531406	0.80[EUR][1000 genomes]
rs35892303	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36186467	0.91[EUR][1000 genomes]
rs3943744	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557108	0.82[CEU][hapmap]
rs4858117	1.00[JPT][hapmap]
rs71328478	0.80[EUR][1000 genomes]
rs71328479	0.89[EUR][1000 genomes]
rs734866	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812620	0.93[ASW][hapmap];0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.89[MKK][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817628	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24457200-24461400	Enhancers	Liver	Liver
5	chr3:24458000-24462000	Enhancers	Fetal Intestine Small	intestine
6	chr3:24458400-24461600	Weak transcription	Aorta	Aorta
7	chr3:24458400-24469800	Weak transcription	Right Ventricle	heart
8	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:24459000-24462000	Enhancers	Fetal Intestine Large	intestine
10	chr3:24459400-24466600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:24459800-24461400	Weak transcription	HepG2	liver
12	chr3:24460000-24462000	Enhancers	Psoas Muscle	Psoas
13	chr3:24460400-24462000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:24460400-24462000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:24460600-24461400	Weak transcription	K562	blood
16	chr3:24460800-24461800	Weak transcription	Right Atrium	heart
17	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
18	chr3:24461200-24461800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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