Variant report

Variant	rs9817628
Chromosome Location	chr3:24463229-24463230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1010163	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098564	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196432	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832185	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34833017	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493522	0.87[EUR][1000 genomes]
rs35892303	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36186467	0.85[EUR][1000 genomes]
rs3943744	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557108	0.83[EUR][1000 genomes]
rs71328479	0.84[EUR][1000 genomes]
rs734866	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626512	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812620	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24458400-24469800	Weak transcription	Right Ventricle	heart
5	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:24459400-24466600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
8	chr3:24462000-24463600	Weak transcription	Fetal Intestine Small	intestine
9	chr3:24462000-24464000	Weak transcription	Fetal Intestine Large	intestine
10	chr3:24462000-24464000	Weak transcription	Psoas Muscle	Psoas
11	chr3:24462000-24464400	Weak transcription	Aorta	Aorta
12	chr3:24462200-24465000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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