Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24457456..24460664-chr3:24464456..24466387,3	K562	blood:
2	chr3:24462847..24466605-chr3:24467925..24473183,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229756	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1010163	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070456	1.00[JPT][hapmap];0.83[TSI][hapmap]
rs13070554	1.00[JPT][hapmap]
rs13077437	1.00[JPT][hapmap]
rs13086758	1.00[JPT][hapmap]
rs17787379	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs2196432	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832185	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34833017	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493522	0.87[EUR][1000 genomes]
rs35892303	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36186467	0.86[EUR][1000 genomes]
rs3943744	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557108	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs4858117	1.00[JPT][hapmap]
rs71328479	0.84[EUR][1000 genomes]
rs734866	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626512	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812620	0.81[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817628	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24458400-24469800	Weak transcription	Right Ventricle	heart
5	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:24459400-24466600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
8	chr3:24462200-24465000	Weak transcription	K562	blood
9	chr3:24463600-24466200	Enhancers	Fetal Intestine Small	intestine
10	chr3:24464000-24465000	Enhancers	Fetal Intestine Large	intestine
11	chr3:24464200-24465200	Enhancers	Brain Germinal Matrix	brain
12	chr3:24464400-24464800	Enhancers	Aorta	Aorta
13	chr3:24464600-24469800	Weak transcription	Psoas Muscle	Psoas

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