Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24468904..24470956-chr3:24474502..24476814,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1010163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098564	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196432	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832185	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34833017	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35493522	0.84[EUR][1000 genomes]
rs35892303	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36186467	0.83[EUR][1000 genomes]
rs3943744	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557108	0.80[EUR][1000 genomes]
rs71328479	0.81[EUR][1000 genomes]
rs7626512	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817628	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
5	chr3:24470200-24475800	Weak transcription	Psoas Muscle	Psoas
6	chr3:24470200-24479000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:24472600-24478800	Weak transcription	Fetal Lung	lung
8	chr3:24474600-24480000	Enhancers	Fetal Intestine Small	intestine
9	chr3:24474800-24476400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:24474800-24483600	Enhancers	Fetal Intestine Large	intestine
11	chr3:24475000-24476600	Enhancers	Fetal Heart	heart
12	chr3:24475200-24476000	Flanking Active TSS	Liver	Liver
13	chr3:24475200-24476000	Enhancers	Gastric	stomach
14	chr3:24475200-24476000	Enhancers	Small Intestine	intestine
15	chr3:24475200-24476400	Enhancers	Duodenum Mucosa	Duodenum
16	chr3:24475200-24476400	Enhancers	K562	blood
17	chr3:24475400-24475600	Enhancers	Brain Germinal Matrix	brain
18	chr3:24475400-24476400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:24475400-24477200	Enhancers	Aorta	Aorta
20	chr3:24475400-24478200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:24475400-24480000	Weak transcription	Pancreas	Pancrea
22	chr3:24475400-24480400	Enhancers	HepG2	liver

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