Variant report

Variant	rs35493522
Chromosome Location	chr3:24447436-24447437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010163	0.87[EUR][1000 genomes]
rs13070456	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086758	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13098564	0.87[EUR][1000 genomes]
rs2196432	0.87[EUR][1000 genomes]
rs34342126	1.00[ASN][1000 genomes]
rs34832185	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34833017	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35531406	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35892303	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36186467	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3943744	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71328478	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71328479	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734866	0.84[EUR][1000 genomes]
rs7626512	0.92[EUR][1000 genomes]
rs9812620	0.87[EUR][1000 genomes]
rs9817628	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24432600-24448400	Weak transcription	Gastric	stomach
2	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
3	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:24443400-24448400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:24443600-24457600	Weak transcription	Fetal Lung	lung
6	chr3:24443800-24448000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:24443800-24448400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:24443800-24449800	Weak transcription	Esophagus	oesophagus
9	chr3:24443800-24456400	Weak transcription	Aorta	Aorta
10	chr3:24443800-24456600	Weak transcription	Pancreas	Pancrea
11	chr3:24443800-24457800	Weak transcription	Psoas Muscle	Psoas
12	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:24444400-24459000	Weak transcription	Fetal Intestine Large	intestine
14	chr3:24446000-24452400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:24446200-24450000	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links