Variant report

Variant	rs36186467
Chromosome Location	chr3:24443978-24443979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010163	0.86[EUR][1000 genomes]
rs13070456	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086758	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13098564	0.86[EUR][1000 genomes]
rs2196432	0.86[EUR][1000 genomes]
rs34342126	1.00[ASN][1000 genomes]
rs34832185	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34833017	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35493522	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35531406	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35892303	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3943744	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71328478	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71328479	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734866	0.83[EUR][1000 genomes]
rs7626512	0.91[EUR][1000 genomes]
rs9812620	0.86[EUR][1000 genomes]
rs9817628	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24432600-24448400	Weak transcription	Gastric	stomach
3	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
4	chr3:24440800-24444400	Enhancers	Fetal Intestine Large	intestine
5	chr3:24440800-24444400	Enhancers	Fetal Intestine Small	intestine
6	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:24443400-24444000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:24443400-24448400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:24443600-24444000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:24443600-24444000	Enhancers	Duodenum Mucosa	Duodenum
11	chr3:24443600-24445600	Weak transcription	Liver	Liver
12	chr3:24443600-24457600	Weak transcription	Fetal Lung	lung
13	chr3:24443800-24448000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:24443800-24448400	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:24443800-24449800	Weak transcription	Esophagus	oesophagus
16	chr3:24443800-24456400	Weak transcription	Aorta	Aorta
17	chr3:24443800-24456600	Weak transcription	Pancreas	Pancrea
18	chr3:24443800-24457800	Weak transcription	Psoas Muscle	Psoas
19	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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