Variant report

Variant	rs71328478
Chromosome Location	chr3:24435696-24435697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24435290..24436941-chr3:24439368..24440896,2	K562	blood:
2	chr3:24421950..24424511-chr3:24434114..24437100,2	K562	blood:
3	chr3:24416630..24419472-chr3:24433631..24435823,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13070456	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086758	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34342126	1.00[ASN][1000 genomes]
rs34832185	0.82[AMR][1000 genomes]
rs34833017	0.86[AMR][1000 genomes]
rs35493522	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35531406	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35892303	0.84[AMR][1000 genomes]
rs36186467	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3943744	0.86[AMR][1000 genomes]
rs71328479	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626512	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24420200-24441600	Weak transcription	Liver	Liver
2	chr3:24430400-24437200	Weak transcription	K562	blood
3	chr3:24430600-24443600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:24431600-24435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:24431600-24437800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:24431600-24437800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:24431600-24438200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:24431800-24442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:24432200-24440800	Weak transcription	Stomach Mucosa	stomach
10	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:24432600-24442000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:24432600-24448400	Weak transcription	Gastric	stomach
13	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
14	chr3:24432800-24440800	Weak transcription	Fetal Intestine Large	intestine
15	chr3:24432800-24440800	Weak transcription	Fetal Intestine Small	intestine
16	chr3:24432800-24443200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:24433600-24435800	Weak transcription	Aorta	Aorta
18	chr3:24435200-24436600	Enhancers	HepG2	liver
19	chr3:24435200-24438600	Weak transcription	Fetal Lung	lung
20	chr3:24435200-24441000	Weak transcription	Left Ventricle	heart
21	chr3:24435200-24443200	Weak transcription	Psoas Muscle	Psoas
22	chr3:24435400-24435800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:24435400-24435800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:24435400-24435800	Weak transcription	Pancreas	Pancrea
25	chr3:24435400-24435800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:24435400-24435800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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