Variant report

Variant	rs35555318
Chromosome Location	chr5:135701540-135701541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr5:135700807-135701671	H1-hESC	embryonic stem cell:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057
2	REST	chr5:135700801-135701544	Hela-S3	cervix:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057
3	REST	chr5:135700527-135701621	PANC-1	pancreas:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057
4	REST	chr5:135700501-135701783	MCF-7	breast:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057
5	REST	chr5:135700646-135701622	PFSK-1	brain:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057
6	REST	chr5:135699977-135701714	HL-60	blood:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057
7	REST	chr5:135700770-135701541	PFSK-1	brain:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057
8	REST	chr5:135700632-135701545	ECC-1	luminal epithelium:	n/a	chr5:135701041-135701061 chr5:135701044-135701057 chr5:135701041-135701061 chr5:135701046-135701055 chr5:135701042-135701060 chr5:135701041-135701061 chr5:135701049-135701059 chr5:135701047-135701061 chr5:135701044-135701057

Variant related genes	Relation type
TRPC7	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11948153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950418	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11954403	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11957982	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13156906	0.82[EUR][1000 genomes]
rs13158017	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13158133	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13158359	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13158415	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13162436	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13164177	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13165205	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13171723	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13174278	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13174705	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13174755	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13177941	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13181603	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13185795	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13186797	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1499761	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1499771	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1499772	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17211941	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17211962	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17791011	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17791023	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34190055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34223526	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34488680	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34665015	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34760171	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34808451	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34934613	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34997105	0.80[EUR][1000 genomes]
rs34999969	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35003312	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35118298	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35175010	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35189853	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35234652	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35695188	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36139242	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3777147	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4501337	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55633021	0.82[EUR][1000 genomes]
rs55635821	0.82[EUR][1000 genomes]
rs55726215	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55996753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385831	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62387388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387410	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6871232	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71589310	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7703358	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7705405	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35555318	SMAD5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:135700800-135701600	Bivalent Enhancer	Fetal Brain Male	brain
2	chr5:135701000-135701600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr5:135701000-135701600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr5:135701200-135701600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr5:135701200-135701600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:135701400-135701600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr5:135701400-135701800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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