Variant report

Variant	rs71589310
Chromosome Location	chr18:24810703-24810704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11948153	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11950418	0.83[EUR][1000 genomes]
rs11954403	0.81[EUR][1000 genomes]
rs11957982	0.82[EUR][1000 genomes]
rs13156906	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13158017	0.83[EUR][1000 genomes]
rs13158133	0.83[EUR][1000 genomes]
rs13158359	0.83[EUR][1000 genomes]
rs13158415	0.83[EUR][1000 genomes]
rs13162436	0.83[EUR][1000 genomes]
rs13164177	0.83[EUR][1000 genomes]
rs13165205	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13171723	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174278	0.83[EUR][1000 genomes]
rs13174705	0.83[EUR][1000 genomes]
rs13174755	0.83[EUR][1000 genomes]
rs13177941	0.83[EUR][1000 genomes]
rs13181603	0.83[EUR][1000 genomes]
rs13185795	0.81[EUR][1000 genomes]
rs13186797	0.83[EUR][1000 genomes]
rs1499761	0.82[EUR][1000 genomes]
rs1499771	0.83[EUR][1000 genomes]
rs1499772	0.83[EUR][1000 genomes]
rs17211941	0.83[EUR][1000 genomes]
rs17211962	0.83[EUR][1000 genomes]
rs17791011	0.83[EUR][1000 genomes]
rs17791023	0.83[EUR][1000 genomes]
rs34190055	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34223526	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34488680	0.82[EUR][1000 genomes]
rs34665015	0.83[EUR][1000 genomes]
rs34756961	0.83[ASN][1000 genomes]
rs34760171	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34808451	0.83[EUR][1000 genomes]
rs34934613	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34999969	0.85[EUR][1000 genomes]
rs35003312	0.83[EUR][1000 genomes]
rs35118298	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175010	0.83[EUR][1000 genomes]
rs35189853	0.81[EUR][1000 genomes]
rs35234652	0.83[EUR][1000 genomes]
rs35555318	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35695188	0.83[EUR][1000 genomes]
rs36139242	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777147	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4501337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633021	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55635821	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55726215	0.83[EUR][1000 genomes]
rs55832007	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55996753	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62385831	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387388	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62387410	0.83[EUR][1000 genomes]
rs6871232	0.81[EUR][1000 genomes]
rs7703358	0.83[EUR][1000 genomes]
rs7705405	0.80[EUR][1000 genomes]
rs9687860	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3370751	chr18:24809654-24813952	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24804000-24811200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:24804800-24811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:24806800-24811200	Weak transcription	NHEK	skin
4	chr18:24807800-24811000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:24807800-24811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:24808000-24811000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:24808000-24811200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr18:24808200-24811000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:24808200-24811000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr18:24808200-24811200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr18:24808200-24811200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:24809200-24811000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr18:24809800-24811200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr18:24810400-24813000	Enhancers	HUES64 Cell Line	embryonic stem cell

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