Variant report

Variant	rs35605320
Chromosome Location	chr11:35202424-35202425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35199491..35202638-chr11:35207456..35210593,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000026508	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1071695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033013	0.98[ASN][1000 genomes]
rs1570483	1.00[ASN][1000 genomes]
rs34443928	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35861024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881658	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484768	0.82[AMR][1000 genomes]
rs71480068	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3693078	chr11:35179651-35217745	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35189400-35213800	Weak transcription	Right Ventricle	heart
2	chr11:35189400-35218800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:35189600-35204800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:35190200-35204400	Weak transcription	Brain Substantia Nigra	brain
5	chr11:35195000-35211200	Weak transcription	Gastric	stomach
6	chr11:35195800-35213600	Weak transcription	Liver	Liver
7	chr11:35196000-35212200	Weak transcription	Fetal Intestine Small	intestine
8	chr11:35197000-35211600	Weak transcription	HUVEC	blood vessel
9	chr11:35197600-35202600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:35198000-35202600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:35198000-35202600	Strong transcription	Fetal Stomach	stomach
12	chr11:35198000-35202800	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr11:35198000-35202800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:35198000-35203200	Genic enhancers	Osteobl	bone
15	chr11:35198000-35204400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:35198000-35204400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:35198000-35208400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:35198000-35208600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr11:35198000-35223600	Strong transcription	Dnd41	blood
20	chr11:35198000-35232800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:35198200-35202600	Genic enhancers	HMEC	breast
22	chr11:35198200-35203000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:35198200-35203000	Genic enhancers	NH-A	brain
24	chr11:35198200-35204600	Genic enhancers	NHLF	lung
25	chr11:35198200-35210000	Genic enhancers	NHDF-Ad	bronchial
26	chr11:35198200-35219800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr11:35198400-35202600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:35198400-35202800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:35198400-35213000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:35198800-35202600	Genic enhancers	Fetal Muscle Leg	muscle
31	chr11:35198800-35203000	Genic enhancers	Muscle Satellite Cultured Cells	--
32	chr11:35198800-35204400	Genic enhancers	NHEK	skin
33	chr11:35199000-35202600	Genic enhancers	Rectal Mucosa Donor 29	rectum
34	chr11:35199000-35204600	Genic enhancers	Rectal Mucosa Donor 31	rectum
35	chr11:35199200-35202600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:35199200-35203200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
37	chr11:35199400-35203000	Genic enhancers	Colon Smooth Muscle	Colon
38	chr11:35199400-35204000	Genic enhancers	Primary B cells from cord blood	blood
39	chr11:35199400-35207200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:35199400-35211600	Weak transcription	Fetal Intestine Large	intestine
41	chr11:35199600-35203000	Genic enhancers	Rectal Smooth Muscle	rectum
42	chr11:35199600-35207200	Weak transcription	HSMMtube	muscle
43	chr11:35199800-35202600	Genic enhancers	Stomach Smooth Muscle	stomach
44	chr11:35199800-35205800	Genic enhancers	Primary B cells from peripheral blood	blood
45	chr11:35199800-35207800	Genic enhancers	Primary T cells from cord blood	blood
46	chr11:35200000-35202600	Genic enhancers	HSMM	muscle
47	chr11:35200000-35202800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr11:35200000-35204800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr11:35200000-35206800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr11:35200000-35208400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood

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