Variant report

Variant	rs61881658
Chromosome Location	chr11:35208638-35208639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:35203667-35220130	U87	brain:	n/a	n/a
2	POLR2A	chr11:35208604-35210295	U87	brain:	n/a	n/a
3	POLR2A	chr11:35203674-35221500	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35199491..35202638-chr11:35207456..35210593,3	MCF-7	breast:

Variant related genes	Relation type
CD44	TF binding region
ENSG00000026508	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1071695	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11033013	0.93[ASN][1000 genomes]
rs1570483	0.95[ASN][1000 genomes]
rs34443928	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35605320	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35861024	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61881656	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484768	0.80[AMR][1000 genomes]
rs71480068	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3693078	chr11:35179651-35217745	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35189400-35213800	Weak transcription	Right Ventricle	heart
2	chr11:35189400-35218800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:35195000-35211200	Weak transcription	Gastric	stomach
4	chr11:35195800-35213600	Weak transcription	Liver	Liver
5	chr11:35196000-35212200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:35197000-35211600	Weak transcription	HUVEC	blood vessel
7	chr11:35198000-35223600	Strong transcription	Dnd41	blood
8	chr11:35198000-35232800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:35198200-35210000	Genic enhancers	NHDF-Ad	bronchial
10	chr11:35198200-35219800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
11	chr11:35198400-35213000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:35199400-35211600	Weak transcription	Fetal Intestine Large	intestine
13	chr11:35200000-35211200	Weak transcription	Placenta	Placenta
14	chr11:35200600-35244800	Weak transcription	Fetal Brain Male	brain
15	chr11:35200800-35213800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:35200800-35230000	Strong transcription	Primary hematopoietic stem cells	blood
17	chr11:35200800-35230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:35201000-35210600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:35201000-35229600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:35201200-35213400	Weak transcription	Stomach Mucosa	stomach
21	chr11:35201400-35209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:35201400-35211200	Weak transcription	Small Intestine	intestine
23	chr11:35201600-35209600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:35202000-35209600	Weak transcription	Spleen	Spleen
25	chr11:35202000-35212400	Weak transcription	Left Ventricle	heart
26	chr11:35202000-35213800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:35202200-35209600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:35202200-35211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:35202200-35217200	Strong transcription	Hela-S3	cervix
30	chr11:35202200-35228800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr11:35202600-35209400	Weak transcription	Fetal Stomach	stomach
32	chr11:35202600-35209600	Weak transcription	Esophagus	oesophagus
33	chr11:35202600-35209600	Weak transcription	Ovary	ovary
34	chr11:35202600-35213000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:35202600-35213800	Strong transcription	Fetal Muscle Leg	muscle
36	chr11:35202600-35214000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:35202600-35234000	Strong transcription	HMEC	breast
38	chr11:35202600-35234000	Strong transcription	HSMM	muscle
39	chr11:35202600-35234800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:35203000-35211400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:35203000-35218000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:35203000-35231400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr11:35203000-35231400	Strong transcription	NH-A	brain
44	chr11:35203600-35214400	Strong transcription	A549	lung
45	chr11:35204200-35227000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:35204200-35227200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:35204400-35209400	Weak transcription	Pancreas	Pancrea
48	chr11:35204400-35211400	Weak transcription	Fetal Lung	lung
49	chr11:35204600-35209600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:35204600-35211200	Weak transcription	Colonic Mucosa	Colon

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