Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10511313	0.84[ASN][1000 genomes]
rs10804506	0.83[ASN][1000 genomes]
rs11705758	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11714354	0.83[ASN][1000 genomes]
rs11718878	0.83[ASN][1000 genomes]
rs11720045	0.85[ASN][1000 genomes]
rs13076130	0.85[ASN][1000 genomes]
rs2133946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2220397	0.84[ASN][1000 genomes]
rs28394328	0.89[EUR][1000 genomes]
rs6798395	0.84[ASN][1000 genomes]
rs6807722	0.84[ASN][1000 genomes]
rs7609699	0.84[ASN][1000 genomes]
rs7639603	0.83[ASN][1000 genomes]
rs9288964	0.83[ASN][1000 genomes]
rs9813901	0.85[ASN][1000 genomes]
rs9815002	0.84[ASN][1000 genomes]
rs9823692	0.85[ASN][1000 genomes]
rs9838295	0.84[ASN][1000 genomes]
rs9839592	0.83[ASN][1000 genomes]
rs9846377	0.84[ASN][1000 genomes]
rs9852577	0.84[ASN][1000 genomes]
rs9853006	0.83[ASN][1000 genomes]
rs9856680	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9869058	0.84[ASN][1000 genomes]
rs9869203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9871326	0.80[ASN][1000 genomes]
rs9883749	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112652000-112658800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:112652200-112656600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:112653200-112656600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:112656200-112657000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

Quick Search: