Variant report

Variant	rs11705758
Chromosome Location	chr3:112651209-112651210
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511313	0.84[ASN][1000 genomes]
rs10804506	0.83[ASN][1000 genomes]
rs11711794	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11714354	0.83[ASN][1000 genomes]
rs11718878	0.83[ASN][1000 genomes]
rs11720045	0.85[ASN][1000 genomes]
rs13076130	0.85[ASN][1000 genomes]
rs2133946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2220397	0.84[ASN][1000 genomes]
rs28394328	0.88[EUR][1000 genomes]
rs35611650	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798395	0.84[ASN][1000 genomes]
rs6807722	0.84[ASN][1000 genomes]
rs7609699	0.84[ASN][1000 genomes]
rs7639603	0.83[ASN][1000 genomes]
rs9288964	0.83[ASN][1000 genomes]
rs9813901	0.85[ASN][1000 genomes]
rs9815002	0.84[ASN][1000 genomes]
rs9823692	0.85[ASN][1000 genomes]
rs9828321	0.89[CEU][hapmap]
rs9838295	0.84[ASN][1000 genomes]
rs9839592	0.83[ASN][1000 genomes]
rs9846377	0.84[ASN][1000 genomes]
rs9852577	0.84[ASN][1000 genomes]
rs9853006	0.83[ASN][1000 genomes]
rs9856680	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9869058	0.84[ASN][1000 genomes]
rs9869203	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9871326	0.80[ASN][1000 genomes]
rs9883749	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112647800-112651400	Weak transcription	Esophagus	oesophagus
2	chr3:112649600-112652600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:112650400-112651400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:112650400-112652200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:112650400-112652200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:112650400-112652600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:112650600-112651400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:112650600-112651800	Enhancers	Primary T cells from cord blood	blood
9	chr3:112650600-112651800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:112650600-112652000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:112650600-112652200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr3:112650600-112652600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:112650800-112651400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:112650800-112652000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:112650800-112652000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr3:112650800-112652400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:112651000-112651400	Enhancers	Adipose Nuclei	Adipose
18	chr3:112651000-112651600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:112651000-112651800	Enhancers	Spleen	Spleen

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