Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511313	0.82[ASN][1000 genomes]
rs10804506	0.81[ASN][1000 genomes]
rs11705758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11711794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714354	0.81[ASN][1000 genomes]
rs11718878	0.81[ASN][1000 genomes]
rs11720045	0.83[ASN][1000 genomes]
rs13076130	0.83[ASN][1000 genomes]
rs2220397	0.82[ASN][1000 genomes]
rs28394328	0.89[EUR][1000 genomes]
rs35611650	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763318	0.82[GIH][hapmap]
rs6798395	0.82[ASN][1000 genomes]
rs6807722	0.82[ASN][1000 genomes]
rs7609699	0.82[ASN][1000 genomes]
rs7639603	0.81[ASN][1000 genomes]
rs9288964	0.81[ASN][1000 genomes]
rs9813901	0.83[ASN][1000 genomes]
rs9815002	0.82[ASN][1000 genomes]
rs9823692	0.83[ASN][1000 genomes]
rs9828321	0.89[CEU][hapmap]
rs9838295	0.82[ASN][1000 genomes]
rs9839592	0.81[ASN][1000 genomes]
rs9846377	0.82[ASN][1000 genomes]
rs9852577	0.82[ASN][1000 genomes]
rs9853006	0.81[ASN][1000 genomes]
rs9856680	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9869058	0.82[ASN][1000 genomes]
rs9869203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9883749	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3451435	chr3:112666858-112667205	Weak transcription Strong transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112661000-112669800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:112661200-112677000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:112662000-112667800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:112663800-112668800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:112664400-112669400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:112665200-112677800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:112665600-112675400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:112666200-112670200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:112666200-112673200	Weak transcription	Primary T cells from cord blood	blood
10	chr3:112666400-112675400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:112666600-112667400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:112666800-112667200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
13	chr3:112666800-112668600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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