Variant report

Variant	rs28394328
Chromosome Location	chr3:112679066-112679067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112357720..112359905-chr3:112678923..112681367,2	MCF-7	breast:
2	chr3:112358444..112361440-chr3:112678647..112681101,2	K562	blood:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11705758	0.88[EUR][1000 genomes]
rs11711794	0.89[EUR][1000 genomes]
rs2133946	0.89[EUR][1000 genomes]
rs35611650	0.89[EUR][1000 genomes]
rs4682448	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9828321	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9856680	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9869203	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9883749	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112675800-112682600	Weak transcription	Spleen	Spleen
2	chr3:112675800-112682800	Weak transcription	Adipose Nuclei	Adipose
3	chr3:112676200-112682000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:112677200-112680200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:112677400-112679200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:112678000-112679200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:112678200-112679200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:112678200-112679200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:112678200-112679400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:112678200-112679600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:112678200-112681200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:112678200-112681600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:112678200-112684000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:112678400-112679400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:112678600-112679200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr3:112678600-112679200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:112678600-112679200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:112679000-112679200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr3:112679000-112679200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr3:112679000-112679400	Enhancers	Primary T cells from cord blood	blood
21	chr3:112679000-112679400	Enhancers	GM12878-XiMat	blood
22	chr3:112679000-112681000	Weak transcription	Primary hematopoietic stem cells	blood

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