Variant report

Variant	rs9856680
Chromosome Location	chr3:112682948-112682949
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11705758	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11711794	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2133946	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28394328	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35611650	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9828321	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9869203	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9883749	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112678200-112684000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:112681600-112683000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
3	chr3:112681800-112683000	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr3:112681800-112683000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr3:112682000-112683000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
6	chr3:112682000-112683000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
7	chr3:112682200-112683000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:112682400-112683000	Weak transcription	Thymus	Thymus
9	chr3:112682600-112683000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
10	chr3:112682600-112683200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:112682600-112683200	ZNF genes & repeats	Spleen	Spleen
12	chr3:112682600-112684400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:112682800-112683000	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr3:112682800-112683000	ZNF genes & repeats	Aorta	Aorta
15	chr3:112682800-112683000	ZNF genes & repeats	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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