Variant report

Variant	rs9828321
Chromosome Location	chr3:112680865-112680866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11705758	0.89[CEU][hapmap]
rs12494693	0.80[AMR][1000 genomes]
rs2133946	0.89[CEU][hapmap]
rs28394328	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4682448	0.89[CEU][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9856680	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9883749	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112675800-112682600	Weak transcription	Spleen	Spleen
2	chr3:112675800-112682800	Weak transcription	Adipose Nuclei	Adipose
3	chr3:112676200-112682000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:112678200-112681200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:112678200-112681600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:112678200-112684000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:112679000-112681000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:112679200-112682000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:112679200-112682600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:112679400-112681800	Weak transcription	Primary T cells from cord blood	blood
11	chr3:112679400-112681800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:112679600-112682600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr3:112680200-112681000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:112680400-112681200	Enhancers	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links