Variant report

Variant	rs357418
Chromosome Location	chr7:138033955-138033956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs357417	0.81[ASN][1000 genomes]
rs357419	0.81[ASN][1000 genomes]
rs357420	0.81[ASN][1000 genomes]
rs357422	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs357433	0.86[ASN][1000 genomes]
rs357440	0.85[ASN][1000 genomes]
rs357441	0.85[ASN][1000 genomes]
rs357442	0.84[ASN][1000 genomes]
rs357443	0.84[ASN][1000 genomes]
rs357455	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs357418	TRIM24	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138033400-138034000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:138033800-138035200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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