Variant report
| Variant | rs357433 |
|---|---|
| Chromosome Location | chr7:138026167-138026168 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12707380 | 0.80[ASN][1000 genomes] |
| rs1691717 | 0.80[ASN][1000 genomes] |
| rs357380 | 0.83[EUR][1000 genomes] |
| rs357405 | 0.82[AMR][1000 genomes] |
| rs357413 | 0.80[AMR][1000 genomes] |
| rs357415 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs357416 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs357417 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs357418 | 0.86[ASN][1000 genomes] |
| rs357420 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs357434 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs357436 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs357438 | 0.80[ASN][1000 genomes] |
| rs357439 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs357440 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs357441 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs357442 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs357443 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs357444 | 0.85[ASN][1000 genomes] |
| rs357452 | 0.83[ASN][1000 genomes] |
| rs357453 | 0.81[ASN][1000 genomes] |
| rs357455 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs368043 | 0.83[EUR][1000 genomes] |
| rs376305 | 0.80[ASN][1000 genomes] |
| rs396783 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs424335 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv831152 | chr7:137884311-138033117 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3348355 | chr7:138022746-138072487 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:138019400-138028000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr7:138023000-138027200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
