Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12707380	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1691717	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs357405	0.80[AMR][1000 genomes]
rs357415	0.81[ASN][1000 genomes]
rs357416	0.81[ASN][1000 genomes]
rs357418	0.85[ASN][1000 genomes]
rs357420	1.00[CHB][hapmap]
rs357433	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357434	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs357436	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs357438	0.80[ASN][1000 genomes]
rs357439	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs357441	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357442	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357443	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357444	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs357452	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs357453	0.81[ASN][1000 genomes]
rs357455	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs376305	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs396783	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs402615	0.81[EUR][1000 genomes]
rs403675	0.81[EUR][1000 genomes]
rs410187	0.82[CHB][hapmap]
rs414919	0.83[EUR][1000 genomes]
rs424335	0.80[ASN][1000 genomes]
rs424847	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138019400-138028000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:138022200-138023200	Enhancers	HUVEC	blood vessel

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