Variant report

Variant	rs357405
Chromosome Location	chr7:138041329-138041330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1035329	1.00[AFR][1000 genomes]
rs11536612	0.93[AFR][1000 genomes]
rs357370	0.93[AFR][1000 genomes]
rs357374	0.93[AFR][1000 genomes]
rs357375	0.93[AFR][1000 genomes]
rs357380	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs357406	0.85[ASN][1000 genomes]
rs357407	0.89[ASN][1000 genomes]
rs357409	0.92[ASN][1000 genomes]
rs357410	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357413	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357415	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs357416	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs357417	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs357419	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs357420	0.87[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs357422	0.82[ASN][1000 genomes]
rs357433	0.82[AMR][1000 genomes]
rs357434	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs357436	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs357439	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs357440	0.80[AMR][1000 genomes]
rs357442	0.82[AMR][1000 genomes]
rs357455	0.81[AMR][1000 genomes]
rs368043	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs378745	0.93[AFR][1000 genomes]
rs396783	0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs407702	0.93[AFR][1000 genomes]
rs410156	0.93[AFR][1000 genomes]
rs410187	1.00[ASW][hapmap];0.85[TSI][hapmap];0.93[AFR][1000 genomes]
rs424335	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs424847	1.00[ASW][hapmap];0.85[TSI][hapmap];0.93[AFR][1000 genomes]
rs443184	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs357405	CLEC5A	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138039600-138044400	Weak transcription	HepG2	liver
2	chr7:138041000-138042000	Enhancers	K562	blood

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