Variant report

Variant	rs396783
Chromosome Location	chr7:138011908-138011909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138011680..138013976-chr7:138143884..138146522,2	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1035329	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11536612	0.85[EUR][1000 genomes]
rs12707380	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1691717	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357370	0.87[EUR][1000 genomes]
rs357374	0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs357375	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs357380	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357387	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs357405	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs357410	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs357413	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357415	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs357416	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs357417	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357419	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357420	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357422	0.83[ASN][1000 genomes]
rs357433	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs357434	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357436	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357438	0.93[ASN][1000 genomes]
rs357439	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357440	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs357441	0.83[ASN][1000 genomes]
rs357442	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs357443	0.82[ASN][1000 genomes]
rs357444	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357452	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357453	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs357455	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs368043	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs368370	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs373089	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs376305	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378745	0.85[EUR][1000 genomes]
rs386059	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs401454	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs402615	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs403675	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs407702	0.84[EUR][1000 genomes]
rs409365	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs410156	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs410187	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs414919	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs424197	0.85[EUR][1000 genomes]
rs424335	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs424847	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs443184	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv5967	chr7:137988239-138015844	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137995200-138012000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:138006200-138012400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:138010000-138012400	Weak transcription	Fetal Heart	heart
4	chr7:138010000-138012400	Weak transcription	Placenta	Placenta
5	chr7:138010400-138012400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:138011400-138013600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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