Variant report

Variant	rs357444
Chromosome Location	chr7:138020998-138020999
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1035329	0.80[EUR][1000 genomes]
rs12707380	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1691717	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17169585	0.85[YRI][hapmap]
rs357375	0.81[JPT][hapmap]
rs357380	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs357387	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs357410	0.81[EUR][1000 genomes]
rs357413	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357415	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs357416	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs357417	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357419	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357420	0.92[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357422	0.84[ASN][1000 genomes]
rs357433	0.85[ASN][1000 genomes]
rs357434	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357436	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357438	0.95[ASN][1000 genomes]
rs357439	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357440	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs357441	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs357442	0.84[ASN][1000 genomes]
rs357443	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs357452	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs357453	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs357455	0.83[ASN][1000 genomes]
rs368043	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs368370	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs373089	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs376305	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs386059	0.90[EUR][1000 genomes]
rs396783	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401454	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs402615	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs403675	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs409365	0.90[EUR][1000 genomes]
rs410156	0.82[JPT][hapmap]
rs410187	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs414919	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs424335	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs424847	0.85[CEU][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138019400-138028000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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