Variant report
| Variant | rs357422 |
|---|---|
| Chromosome Location | chr7:138033197-138033198 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000122779 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12707380 | 0.81[ASN][1000 genomes] |
| rs1691717 | 0.81[ASN][1000 genomes] |
| rs357405 | 0.82[ASN][1000 genomes] |
| rs357409 | 0.89[ASN][1000 genomes] |
| rs357410 | 0.85[ASN][1000 genomes] |
| rs357413 | 0.94[ASN][1000 genomes] |
| rs357415 | 0.90[ASN][1000 genomes] |
| rs357416 | 0.90[ASN][1000 genomes] |
| rs357417 | 0.95[ASN][1000 genomes] |
| rs357418 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs357419 | 0.95[ASN][1000 genomes] |
| rs357420 | 0.95[ASN][1000 genomes] |
| rs357434 | 0.85[ASN][1000 genomes] |
| rs357436 | 0.85[ASN][1000 genomes] |
| rs357438 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs357439 | 0.85[ASN][1000 genomes] |
| rs357444 | 0.84[ASN][1000 genomes] |
| rs357452 | 0.83[ASN][1000 genomes] |
| rs357453 | 0.81[ASN][1000 genomes] |
| rs376305 | 0.81[ASN][1000 genomes] |
| rs396783 | 0.83[ASN][1000 genomes] |
| rs424335 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | esv3348355 | chr7:138022746-138072487 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs357422 | TRIM24 | cis | Adipose Subcutaneous | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
