Variant report

Variant	rs357419
Chromosome Location	chr7:138033826-138033827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138033084..138034621-chr7:138145195..138147214,2	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1035329	0.84[EUR][1000 genomes]
rs11536612	0.81[EUR][1000 genomes]
rs12707380	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1691717	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs357370	0.82[EUR][1000 genomes]
rs357375	0.80[EUR][1000 genomes]
rs357380	0.94[EUR][1000 genomes]
rs357387	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs357405	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs357409	0.84[ASN][1000 genomes]
rs357410	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs357413	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357415	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs357416	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs357417	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357418	0.81[ASN][1000 genomes]
rs357420	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357422	0.95[ASN][1000 genomes]
rs357434	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs357436	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs357438	0.85[ASN][1000 genomes]
rs357439	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs357444	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357452	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357453	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs368043	0.94[EUR][1000 genomes]
rs368370	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs373089	0.91[EUR][1000 genomes]
rs376305	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs378745	0.80[EUR][1000 genomes]
rs386059	0.82[EUR][1000 genomes]
rs396783	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs401454	0.91[EUR][1000 genomes]
rs402615	0.90[EUR][1000 genomes]
rs403675	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs409365	0.82[EUR][1000 genomes]
rs410156	0.81[EUR][1000 genomes]
rs410187	0.81[EUR][1000 genomes]
rs414919	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs424197	0.81[EUR][1000 genomes]
rs424335	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs424847	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138033400-138034000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:138033800-138035200	Enhancers	Fetal Brain Male	brain

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