Variant report

Variant	rs357413
Chromosome Location	chr7:138036286-138036287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138030718..138033704-chr7:138034861..138038720,3	K562	blood:
2	chr7:137941053..137942559-chr7:138036086..138038896,2	K562	blood:
3	chr7:138035919..138038912-chr7:138143414..138146146,5	K562	blood:
4	chr7:137587919..137589974-chr7:138035321..138037174,2	K562	blood:
5	chr7:138035941..138037623-chr7:138143502..138146608,3	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1035329	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12707380	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1691717	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs357370	0.82[EUR][1000 genomes]
rs357380	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs357387	0.82[ASN][1000 genomes]
rs357405	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357407	0.81[ASN][1000 genomes]
rs357409	0.85[ASN][1000 genomes]
rs357410	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs357415	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs357416	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs357417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357419	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357420	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs357422	0.94[ASN][1000 genomes]
rs357433	0.80[AMR][1000 genomes]
rs357434	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357436	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357438	0.84[ASN][1000 genomes]
rs357439	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs357442	0.80[AMR][1000 genomes]
rs357444	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357452	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs357453	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs368043	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs368370	0.83[EUR][1000 genomes]
rs373089	0.82[EUR][1000 genomes]
rs376305	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs396783	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs401454	0.83[EUR][1000 genomes]
rs402615	0.83[EUR][1000 genomes]
rs403675	0.83[EUR][1000 genomes]
rs424335	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3348355	chr7:138022746-138072487	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138034400-138038800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:138034600-138036800	ZNF genes & repeats	K562	blood

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