Variant report

Variant	rs35781270
Chromosome Location	chr6:2010485-2010486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:2009784..2011598-chr6:2035176..2037362,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484947	1.00[ASN][1000 genomes]
rs10484948	1.00[ASN][1000 genomes]
rs11242727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134684	1.00[ASN][1000 genomes]
rs2076854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28736862	1.00[ASN][1000 genomes]
rs56905405	1.00[ASN][1000 genomes]
rs57366578	1.00[ASN][1000 genomes]
rs57777283	0.87[AFR][1000 genomes]
rs58499654	1.00[ASN][1000 genomes]
rs59275343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59609802	1.00[ASN][1000 genomes]
rs59936111	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59952501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61109748	1.00[ASN][1000 genomes]
rs625781	1.00[ASN][1000 genomes]
rs6930064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72494599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410424	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410429	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412553	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412554	1.00[EUR][1000 genomes]
rs73414521	1.00[ASN][1000 genomes]
rs73414524	1.00[ASN][1000 genomes]
rs73414527	1.00[ASN][1000 genomes]
rs73414530	1.00[ASN][1000 genomes]
rs73414544	1.00[ASN][1000 genomes]
rs73416657	1.00[ASN][1000 genomes]
rs73416659	1.00[ASN][1000 genomes]
rs73427457	1.00[ASN][1000 genomes]
rs73716941	1.00[ASN][1000 genomes]
rs73716945	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv1032727	chr6:1900622-2064690	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538095	chr6:1900622-2064690	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv883386	chr6:1910108-2122454	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv981098	chr6:2008599-2102267	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1990400-2010800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:1993000-2021200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:2000000-2021200	Weak transcription	Small Intestine	intestine
4	chr6:2006200-2034800	Weak transcription	HepG2	liver
5	chr6:2008200-2021200	Weak transcription	Left Ventricle	heart
6	chr6:2008800-2011800	Weak transcription	Gastric	stomach
7	chr6:2008800-2012400	Weak transcription	Pancreas	Pancrea
8	chr6:2009200-2011600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:2009600-2010800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr6:2009600-2021000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:2009800-2021000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:2010200-2010600	ZNF genes & repeats	Fetal Intestine Large	intestine
13	chr6:2010400-2011800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links